sculab/RASP

RASP is a Windows Forms application designed for reconstructing ancestral states in phylogenetic trees. It provides tools for Bayesian phylogenetic analysis, including parsing MCMC output and configuring model parameters, alongside utilities for batch file processing. The system also includes tutorial examples with viral sequence alignments to guide users through the software's capabilities.

The Codes area now includes new components for Bayesian phylogenetic analysis and batch file operations. The \Module\_BBM\ module implements logic to parse and process Bayesian MCMC output files, calculating posterior probabilities and writing results to log files. The \Config\_BBM\ form provides a user interface for configuring Bayesian analysis parameters, including model selection (JC, F81), rate heterogeneity settings, and MCMC chain configurations, which are then passed to an external executable (\mb.3.2.7-win32\). Additionally, the \Batch\_Tools\ form and its associated code introduce a new utility for batch processing files, allowing users to list, convert, or delete files within a selected directory structure.

Codes · high confidence

Added a new FASTA file containing multiple sequence alignments for Ebola virus (EBOV) and Bundibugyo virus (BDBV) strains to the Tutorials examples. This provides users with reference sequence data for the Ebola alignment tutorial.

Tutorials · high confidence

Added new project files including Application.Designer.vb, Application.myapp, AssemblyInfo.vb, PublishProfiles/FolderProfile.pubxml, Resources.Designer.vb, Resources.resx, Resources1.Designer.vb, Settings.Designer.vb, Settings.settings, and app.manifest. These files configure the application's startup behavior, resource management, settings persistence, and deployment profile for Windows Forms.

My Project · high confidence

The repository was initialized with the core project structure for the RASP (Reconstruct Ancestral State in Phylogenies) software. This includes the Visual Studio solution file (RASP.sln) and project configuration (app.config) for logging and runtime settings, along with auto-generated Visual Basic designer files (Application.Designer.vb, Resources.Designer.vb, Settings.Designer.vb) that handle application startup, resource management, and settings persistence. The project metadata is defined in AssemblyInfo.vb, and the project is released under the MIT License as documented in the LICENSE file.

(repo-wide) · high confidence

The RASP project file (RASP.vbproj) has been added, configuring the application as a Windows Forms app targeting .NET 6.0. This establishes the build and runtime environment for the RASP application, including settings for manifest generation, assembly versioning, and resource compilation.

(dependencies) · high confidence

Written by watchdog.canine.dev from the codebase's own history, inside the signed delivery this page is composed from.

• CAI 39 → 40 (+1.1)
• Rubric changed (rubric-2026.08.18 → rubric-2026.09.15) — scores are not directly comparable.

• Code Health 66 → 56 (-9.9)
• Architecture 60 → 70 (+9.7)
• Maturity 52 → 55 (+3.1)
• Readiness 23 → 23 (+0.0)
• Security 50 → 53 (+3.3)

• Build did not complete in the analyzer
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• Documentation: no installation or build instructions (README.md)
• Documentation: no usage examples (README.md)
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Written by watchdog.canine.dev from the codebase's own history, inside the signed delivery this page is composed from.

sculab/RASP was measured the same way every project in this corpus was: the same rubric, at a pinned commit, with the result published in full. Point a surveyor at a repository you know and see whether you agree with it.